Publications in Erik Marklund Group

  • Allison, Timothy M.; Barran, Perdita; Cianférani, Sarah; Degiacomi, Matteo T. et al.

    Computational Strategies and Challenges for Using Native Ion Mobility Mass Spectrometry in Biophysics and Structural Biology

    Part of Analytical Chemistry, p. 10872-10880, 2020.

  • Larsson, Per; Kneiszl, Rosita C; Marklund, Erik G.

    MkVsites: A tool for creating GROMACS virtual sites parameters to increase performance in all-atom molecular dynamics simulations.

    Part of Journal of Computational Chemistry, p. 1564-1569, 2020.

  • Landreh, Michael; Sahin, Cagla; Gault, Joseph; Sadeghi, Samira et al.

    Predicting the Shapes of Protein Complexes through Collision Cross Section Measurements and Database Searches

    Part of Analytical Chemistry, p. 12297-12303, 2020.

  • Allison, Timothy M.; Barran, Perdita; Benesch, Justin L. P.; Cianférani, Sarah et al.

    Software Requirements for the Analysis and Interpretation of Native Ion Mobility Mass Spectrometry Data

    Part of Analytical Chemistry, p. 10881-10890, 2020.

  • Mandl, Thomas; Östlin, Christofer; Dawod, Ibrahim E.; Brodmerkel, Maxim N. et al.

    Structural Heterogeneity in Single Particle Imaging Using X-ray Lasers

    Part of Journal of Physical Chemistry Letters, p. 6077-6083, 2020.

    Open access
  • Kaldmäe, Margit; Österlund, Nicklas; Lianoudaki, Danai; Sahin, Cagla et al.

    Gas-Phase Collisions with Trimethylamine-N-Oxide Enable Activation-Controlled Protein Ion Charge Reduction

    Part of Journal of the American Society for Mass Spectrometry, p. 1385-1388, 2019.

    Open access
  • Marklund, Erik; Benesch, Justin L. P.

    Weighing-up protein dynamics: the combination of native mass spectrometry and molecular dynamics simulations

    Part of Current opinion in structural biology, p. 50-58, 2019.

    Open access
  • Kaldmae, Margit; Sahin, Cagla; Saluri, Mihkel; Marklund, Erik et al.

    A strategy for the identification of protein architectures directly from ion mobility mass spectrometry data reveals stabilizing subunit interactions in light harvesting complexes

    Part of Protein Science, p. 1024-1030, 2019.

  • Kulesza, Alexander; Marklund, Erik; MacAleese, Luke; Chirot, Fabien et al.

    Bringing Molecular Dynamics and Ion-Mobility Spectrometry Closer Together: Shape Correlations, Structure-Based Predictors, and Dissociation

    Part of Journal of Physical Chemistry B, p. 8317-8329, 2018.

  • Gault, Joseph; Lianoudaki, Danai; Kaldmäe, Margit; Kronqvist, Nina et al.

    Mass Spectrometry Reveals the Direct Action of a Chemical Chaperone

    Part of Journal of Physical Chemistry Letters, p. 4082-4086, 2018.

    Open access
  • Young, Gavin; Hundt, Nikolas; Cole, Daniel; Fineberg, Adam et al.

    Quantitative mass imaging of single biological macromolecules

    Part of Science, p. 423-427, 2018.

  • Marklund, Erik G.; Zhang, Yichen; Basha, Eman; Benesch, Justin L P et al.

    Structural and functional aspects of the interaction partners of the small heat-shock protein in Synechocystis

    Part of Cell stress & chaperones (Print), p. 723-732, 2018.

    Open access
  • Hochberg, Georg K A; Shepherd, Dale A; Marklund, Erik G.; Santhanagoplan, Indu et al.

    Structural principles that enable oligomeric small heat-shock protein paralogs to evolve distinct functions.

    Part of Science, p. 930-935, 2018.

  • Gabelica, Valérie; Marklund, Erik

    Fundamentals of ion mobility spectrometry

    Part of Current opinion in chemical biology, p. 51-59, 2018.

  • Costeira-Paulo, Joana; Gault, Joseph; Popova, Gergana; Ladds, Marcus J G W et al.

    Lipids Shape the Electron Acceptor-Binding Site of the Peripheral Membrane Protein Dihydroorotate Dehydrogenase

    Part of Cell Chemical Biology, p. 309-317, 2018.

    Open access
  • Marklund, Erik; Ekeberg, Tomas; Moog, Mathieu; Benesch, Justin L. P. et al.

    Controlling Protein Orientation in Vacuum Using Electric Fields

    Part of Journal of Physical Chemistry Letters, p. 4540-4544, 2017.

    Open access
  • Landreh, Michael; Costeira-Paulo, Joana; Gault, Joseph; Marklund, Erik et al.

    Effects of Detergent Micelles on Lipid Binding to Proteins in Electrospray Ionization Mass Spectrometry

    Part of Analytical Chemistry, p. 7425-7430, 2017.

    Open access
  • Landreh, Michael; Marklund, Erik G; Uzdavinys, Povilas; Degiacomi, Matteo T. et al.

    Integrating mass spectrometry with MD simulations reveals the role of lipids in Na+/H+ antiporters

    Part of Nature Communications, 2017.

    Open access
  • Landreh, Michael; Andersson, Marlene; Marklund, Erik G.; Jia, Qiupin et al.

    Mass spectrometry captures structural intermediates in protein fiber self-assembly

    Part of Chemical Communications, p. 3319-3322, 2017.

  • Hewitt, Dominic; Marklund, Erik; Scott, David J; Robinson, Carol V et al.

    A hydrodynamic comparison of solution and gas phase proteins and their complexes.

    Part of Journal of Physical Chemistry B, 2014.

  • Marklund, Erik G; Degiacomi, Matteo T; Robinson, Carol V; Baldwin, Andrew J et al.

    Collision cross sections for structural proteomics.

    Part of Structure, 2015.

  • Marklund, Erik G.

    Molecular self-occlusion as a means for accelerating collision cross-section calculations

    Part of International Journal of Mass Spectrometry, p. 54-55, 2015.

  • Marklund, Erik G.; Mahmutovic, Anel; Berg, Otto G.; Hammar, Petter et al.

    Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 19796-19801, 2013.

  • Ullman, Gustaf; Walldén, Mats; Marklund, Erik G.; Mahmutovic, Anel et al.

    High-throughput gene expression analysis at the level of single proteins using a microfluidic turbidostat and automated cell tracking

    Part of Philosophical Transactions of the Royal Society of London. Biological Sciences, p. 20120025:1-8, 2013.

  • Hammar, Petter; Leroy, Prune; Mahmutovic, Anel; Marklund, Erik G et al.

    The lac repressor displays facilitated diffusion in living cells

    Part of Science, p. 1595-1598, 2012.

  • Marklund, Erik

    Gas-Phase Protein Structure Under the Computational Microscope: Hydration, Titration, and Temperature

    Open access
  • van der Spoel, David; Marklund, Erik G.; Larsson, Daniel S. D.; Caleman, Carl

    Proteins, Lipids, and Water in the Gas Phase

    Part of Macromolecular Bioscience, p. 50-59, 2011.

  • Marklund, Erik G.; Larsson, Daniel S. D.; van der Spoel, David; Patriksson, Alexandra et al.

    Structural stability of electrosprayed proteins: temperature and hydration effects

    Part of Physical Chemistry, Chemical Physics - PCCP, p. 8069-8078, 2009.

  • Gabrysch, Markus; Marklund, Erik; Hajdu, Janos; Twitchen, D. J. et al.

    Formation of secondary electron cascades in single-crystalline plasma-deposited diamond upon exposure to femtosecond x-ray pulses

    Part of Journal of Applied Physics, 2008.

    Open access
  • Caleman, Carl; Ortiz, Carlos; Marklund, Erik; Bultmark, Fredrik et al.

    Radiation damage in biological material: electronic properties and electron impact ionization in urea

    Part of Europhysics letters, p. 18005-, 2009.

    Open access
  • Bogan, Michael J; Benner, W Henry; Boutet, Sébastien; Rohner, Urs et al.

    Single particle X-ray diffractive imaging

    Part of Nano letters (Print), p. 310-6, 2008.

  • Patriksson, Alexandra; Marklund, Erik; van der Spoel, David

    Proteins structures under electrospray conditions

    Part of Biochemistry, p. 933-945, 2007.